Programs and data are listed below corresponding to the chapter that they were first used. Click here to download all files in a zip format.

Chapter 1

• Aptima_combo.csv
• Beta.R
• Binomial.R
• Bird.R
• CIpi.R
• ConfLevel.R
• ConfLevel4Intervals.R
• ConfLevelTwoProb.R
• ConfLevelWaldOnly.R
• Corn.R
• DiagnosisCancer.R
• HepCPrev.R
• HIV vaccine clinical trial exercise: PBS Newshour from September 24, 2009: video, transcript, text story; PBS Newshour from October 20, 2009: text story; LA Times article from October 20, 2009
• HIVvaccine.R
• Salk.R
• SimContingencyTable.R

Chapter 2

• challenger.csv
• healthcare_worker.csv
• incontinence.csv
• Logistic.R
• Non-convergence.R
• picloram.csv
• PiPlot.R
• placekick.BW.csv
• Placekick.csv
• Placekick.R
• SamplingDist.R
• TomatoVirus.csv
• TomatoVirus.R
• Tomato Spotted Wilt Virus video from the Backyard Farmer TV show at the University of Nebraska-Lincoln

Chapter 3

• cereal_dillons.csv
• cereal_supersaver.csv
• CumulativeLogitModelPlot.R
• Fiber.csv
• Fiber.R
• ice_cream.csv
• Multinomial.R
• pol_ideol_data.csv
• wheat.csv
• Wheat.R

Chapter 4

• AlcoholPoRegs.R
• BeetleEggCrowding.R
• BeetleEggCrowding.txt
• BeetleEggCrowdingZIP.R
• BirdCountPoReg.R
• BirdCounts.csv
• BladderCancer.csv
• DeHart.csv
• DeHartSimplified.csv
• dt.csv
• FiberBloating.R
• HIVvaccinePoisson.R
• LarryBirdPoReg.R
• PoiConfLevels.R
• PoissonNormalDistPlots.R
• PolIdeolData.csv
• PolIdeolNominal.R
• PolIdeolOrd.R
• PoRegLinks.R
• pregnancy.csv
• ships.csv
• starbucks.csv
• Stoplight.csv
• Stoplight.R
• Stormchaser.csv
• ZeroInflPoiDistPlots.R
• ZIPSim.R

Chapter 5

• AlcoholDetailed.R
• AllGOFTests.R
• AllSubsetsPlacekick.R
• BirdOverdisp.R
• BirdQuasiPoi.R
• BMAPlacekick.R
• DeathPenalty.csv
• Examine.logistic.reg.R
• glmDiagnostics.R
• glmultiFORmultinom.R
• glmultiFORpolr.R
• glmultiFORzeroinfl.R
• HorseshoeCrabs.csv
• LASSOPlacekick.R
• LogisticRegBiasVarianceSim.R
• multinomDiagnostics.R
• OverdispAddVariable.R
• OverdispSim.R
• placekick.mb.csv
• PlacekickDiagnostics.R
• Placekick-FindBestModel.R
• PostFitGOFTest.R
• StepwisePlacekick.R

Chapter 6

• BL2004.csv
• CIpiBayes.R
• ex5.2.csv
• FallHead.csv
• FallsGEE.R
• FallsGLMM.R
• FiberExact.R
• HepCPrevSeSp.R
• HIVKenya.csv
• HIVKenya.R
• LogisticSim.R
• MP5.1.R
• PlacekickBayes.R
• PlacekickWithNames.csv
• SmokeRespAge.txt
• SurveySmoke.R
• SurveySmokeLogistic.R
• SurveySmokeLoglinear.R
• swine.csv
• Swine.R
• Tea.R
• TomatoVirusFull.csv
• uti.csv

Appendix A

• AppendixInitialExamples.R
• gpa.csv
• GPA.R
• gpa.txt
• gpa.xls

Appendix B

• LikelihoodFunction.R
• LR-Plots.R
• NewtonRaphson.R
• PoissonLikelihood.R
• SaturatedModelExample.R
• ScorePlot.R