Day 1

• Office location
• Syllabus; syllabus supplement; OfficeHours.docx
• CourseStructure.docx
• EquationFonts.docx, mtextra.ttf

Chapter 1

• Notes/videos, part number given in the file name
  • OneBinary-Distribution-1.docx, video
  • OneBinary-Inference-MLE-2.docx, video
  • OneBinary-Inference-CI-3.docx, video
  • OneBinary-Inference-HypothesisTests-4.docx, video
  • OneBinary-TrueConfLevel-5.docx, video
  • TwoBinary-NotationModel-6.docx, video
  • TwoBinary-CItwoProb-7.docx, video
  • TwoBinary-TestTwoProb-8.docx, video
  • TwoBinary-RelativeRisk-9.docx, video
  • TwoBinary-OddsRatio-10.docx, video
• Data and programs referred to in the notes
  • AsthmaAntibiotic.R
  • Beta.R
  • Binomial.R
  • Bird.R
  • CIpi.R
  • ConfLevel.R
  • ConfLevelTwoProb.R
  • ConfLevelWaldOnly.R
  • ConfLevel4Intervals.R
  • COVID19vaccine.R
  • HIV.R
• Data and programs from 1st edition of the book
• Practice problems
• Additional items
  • Abdalhamid et al. (2020)
  • Bilder et al. (2020)
  • Field goals: Justin Tucker field goal video, Husker field goal video
  • Governor Pete Rickets video: Description of group (pooled) testing during press conference
  • HIV vaccine: PBS Newshour, Seattle Times, LA Times, Rerks-Ngarm et al. (2009)
  • Uldbjerg et al. (2021)
  • Yale assay for COVID-19 - Used by UNL
  • Remember to reproduce examples within the notes

Chapter 2

• Notes/videos, part number given in the file name
  • RegModel-1.docx, video
  • RegParameterEst-Part1-2.docx, video
  • RegParameterEst-Part2-3.docx, video
  • HypothesisTests-4.docx, video
  • OddsRatios-5.docx, video
  • ProbSuccess-EstimateInference-6.docx, video
  • ProbSuccess-Plots-7.docx, video
  • InterTrans-Interactions-8.docx, video
  • InterTrans-Transformations-9.docx, video
  • CategoricalExplanatoryVariable-Form-10.docx, video
  • CategoricalExplanatoryVariable-OR-11.docx, video
  • Convergence-12.docx, video
  • GLM-13.docx, video
• Data and programs referred to in the notes
  • 4levels.R
  • Non-convergence.R
  • PiPlot.R
  • Placekick.csv
  • Placekick.R
  • Placekick-emmeans.R
  • PlacekickDistanceSq.R
  • TomatoVirus.csv
  • TomatoVirus.R
• Data and programs from 1st edition of the book
• Practice problems
• Additional items
  • Bilder and Loughin (1998)
  • Tomato Spotted Wilt virus video
  • MosquitoesBeer.docx, Mosquitoes.R, mosquitoes.csv, video, Lefevre et al. (2010)
  • Uldbjerg et al. (2021)
  • Remember to reproduce examples within the notes

Chapter 3

• Notes/videos, part number given in the file name
  • MultinomialDistribution-1.docx, video
  • ContigencyTable-2.docx, video
  • Independence-3.docx, video
  • NominalResponse-Model-4.docx, video
  • NominalResponse-OddsRatio-5.docx, video    
  • NominalResponse-Table-6.docx, video
  • OrdinalResponse-Model-7.docx, video
  • OrdinalResponse-OddsRatio-8.docx, video
  • OrdinalResponse-Table-9.docx, video
  • AdditionalTopics-10.docx, video
• Data and programs referred to in the notes
  • alligator.csv
  • CumulativeLogitModelPlot.R
  • fiber.csv
  • Fiber.R
  • Multinomial.R
  • wheat.csv
  • Wheat.R
• Data and programs from 1st edition of the book
• Practice problems
• Data and programs not book
• Additional items
  • DAVF.docx, DAVF.R
  • FoodChoice.docx, FoodChoiceNew.csv, Gustafson et al. (2018), FoodChoice.R, Nebraska Today
  • Plinko.docx, Plinko.R, Plinko.csv
  • Remember to reproduce examples within the notes

Chapter 4

• Notes/videos, part number given in the file name
  • Distribution-1.docx, video
  • Model-Estimate-2.docx, video
  • Model-PC-3.docx, video
  • Model-ContingencyTable-4.docx, video
  • RateRegression-5.docx, video
• Data and programs referred to in the notes
  • BirdCh4.R
  • CH14TA08.csv
  • Horseshoe.csv
  • Horseshoe.R
  • Stoplight.csv
  • Stoplight.R
  • StoplightAdditional.R
• Data and programs from 1st edition of the book
• Practice problems
• Additional items
  • Horseshoe crabs
  • Remember to reproduce examples within the notes

Chapter 5

• Notes/videos, part number given in the file name
  • VariableSelection-ICallSubsets-1.docx, video
  • VariableSelection-ICstepwise-2.docx, video
  • ModelAssessment-Residuals-3.docx, video
  • ModelAssessment-ResidualPlots-4.docx, video
  • ModelAssessment-GOFinfluence-5.docx, video
  • Overdispersion-QuasiPoisson-6.docx, video
  • Overdispersion-NegativeBinomial-7.docx, video
  • Example-8.docx, video
• Data and programs referred to in the notes
  • AllSubsetsPlacekick.R
  • Examine.logistic.reg.R
  • glmDiagnostics.R
  • Horseshoe_ch5.R
  • Placekick-FindBestModel_NotInBook.R
  • Placekick_NotInBook.R
  • stepwisePlacekick.R
• Data and programs from 1st edition of the book
• Practice problems
• Additional items
  • ATC-inclass.docx, ATC-inclass.R, ATC.csv, Broach and Schroeder (2006)
  • Remember to reproduce examples within the notes

Chapter 6

• Notes/videos, part number given in the file name
  • ExactInference-FisherExact-1.docx, video
  • ExactInference-PermutationTest-2.docx, video
• Data and programs referred to in the notes
  • FiberExact.R
  • Tea.R
• Data and programs from 1st edition of the book
• Practice problems
• Additional items
  • Prediction by the Numbers episode on Nova - lady tasting tea video, YouTube
  • Remember to reproduce examples within the notes

Appendix A

• Notes/videos, part number given in the file name
  • R_intro-Basics-1.docx, video
  • R_intro-ProgramEditors-2.docx, video
  • R_intro-Example-3.docx, video
  • R_intro-ObjectOrientedLanguage-4.docx, video
• Data and programs referred to in the notes
  • AppendixInitialExamples.R
  • gpa.csv
  • gpa.R
  • gpa.txt
• Data and programs from 1st edition of the book
• Additional items
  • Remember to reproduce examples within the notes

Appendix B

• Notes/videos - Because this appendix is not examined alone, notes for it are embeded within the notes of other chapters.
• Data and programs from 1st edition of the book